YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27802453, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRPAARRW GKCGPLCTRE SIMVAFKGVW TQTFWKAVTA EFLAMLIFVL LSLGSTINWG  60
   61 GAEKPLPVDM VLISLCFGLS IATMVQCFGH ISGGHINPAV TVAMVCTRRI SIAKAVFYIA 120
  121 AQCLGAIIGA GILYLVTPPS VVGGLGVTTV HRNLSAGHGL LVELIITFQL VFTIFASCDS 180
  181 KRTDVTGSIA LAIGISVAIG HLFAINYTGA SMNPARSFGP AVIMGNWENH WIYWVGPIIG 240
  241 AVLAGGLYEY VFCPDVELKR RFKEAFSKAA QQTKGSYMEV EDNRSQVETD DLILKPGVVH 300
  301 VIDIDRGEEK KGKDPSGEVL SSV

Type	Start	End	Confidence
Cytoplasmic	1	36	0.87
Transmembrane Helix	37	57	0.87
Non-Cytoplasmic	58	69	0.71
Transmembrane Helix	70	94	0.84
Cytoplasmic	95	114	0.83
Transmembrane Helix	115	136	0.94
Non-Cytoplasmic	137	155	0.89
Transmembrane Helix	156	176	0.94
Cytoplasmic	177	184	0.86
Transmembrane Helix	185	205	0.92
Non-Cytoplasmic	206	230	0.90
Transmembrane Helix	231	252	0.96
Cytoplasmic	253	323	0.99