YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20198300
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNMVRLLLP LLGALAGSFC ARFLGSEGSA IMTTTRVSFS SILVVSFLFC FHFHSFRLKG  60
   61 PQKKIIYLFL VFSMGFVGSL IRIEVIHLVG GLALPVLGPL VLNAIGGQAL PSTGPSGSGS 120
  121 SSMWEEDSFE LGVLEESDSP PAGGSRTEEG EPSVNQGSPL PSQTEEGEPS VNQVPQEAGP 180
  181 ALPANPVPPG GEEAGPVVPY PYRRDEMIGG DSVEAIERRL LAKYPEGSPS AEIIEMARIE 240
  241 AEDLFEIKAQ IIQRMALYDP TGDWMARGAR ALDNPRTTSG EESLERLYDI WKDLQETGPL 300
  301 SDEFSRLQEK VFLKKGGPGG GPYRIRSASL SGWAFASFFI FRYAASSPAR SEKTKWAVMM 360
  361 SEFAPISIYL VISLLVSLIL LGVPFPFASN SSTYPEKLSA YECGFDPSGD ARSRFDIRFY 420
  421 LVSILFLIPD LEVTFFFPWA VPPNKIDLFG FWSMMAFLFI LTIGFLYEWK RGASDRE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.63
Transmembrane Helix	7	25	0.66
Non-Cytoplasmic	26	33	0.83
Transmembrane Helix	34	56	0.88
Cytoplasmic	57	64	0.93
Transmembrane Helix	65	83	0.95
Non-Cytoplasmic	84	90	0.62
Transmembrane Helix	91	112	0.85
Cytoplasmic	113	324	0.97
Transmembrane Helix	325	345	0.87
Non-Cytoplasmic	346	365	0.88
Transmembrane Helix	366	388	0.91
Cytoplasmic	389	418	0.94
Transmembrane Helix	419	440	0.91
Non-Cytoplasmic	441	447	0.87
Transmembrane Helix	448	467	0.96
Cytoplasmic	468	477	0.88