YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42570725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTFNQLIRH GREEKRRTDR TEVLVFGLLV TRIIRFVHSV LFPIPVFCSI KVLLDSFCSL  60
   61 PIINKLSKKW QLIWFYVISV ILCKSLFAVG YLWMDDLSRA ISQFYPVVSG GLGGGNTPMP 120
  121 PTNPSEGGLL EGYYAHENEH SHDQQRGSPF WSKEYKESGS KRLFLNLEVE DQNTDTIGEQ 180
  181 VKAESDKCEK IKAKIIAKTH ELLVSEGYHI PDERDIERAI NVVMTEHEMI DIDRRKKRFY 240
  241 YLYSRLGKNG DKFWVELLEL LSDYDINKSD SDD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.74
Transmembrane Helix	21	39	0.53
Non-Cytoplasmic	40	40	0.39
Transmembrane Helix	41	63	0.56
Cytoplasmic	64	71	0.73
Transmembrane Helix	72	94	0.94
Non-Cytoplasmic	95	273	0.78