YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15226111, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGRARALR QFTLSTGKSA GRNSSGRITV FHRGGGSKRL LRRIDLKRST SSMGIVESIE  60
   61 YDPNRSSQIA PVRWIKGGCQ KKMNTIEKFA PPRKILEPTT NTISGLFSFS FLPGKVDKRK 120
  121 VACFSPGLMA AYVVVGLPTG MPPLSSSKSA FASKGAGSTK TLVKDVFFSA FSSLKAKRET 180
  181 ASLAFASSFG FPRIAVAGAK PAFFAPRMRQ KVRGKSTFSL CEVQKGRTHS ILWAHRIKGK 240
  241 AGLSWQSFRR QDTLGLVGAA GHKKSKPKTD QGNLPAKPIG ERAKQLKALR GLRAKDGACK 300
  301 VDRAPVV

Type	Start	End	Confidence
Cytoplasmic	1	120	0.55
Transmembrane Helix	121	141	0.50
Non-Cytoplasmic	142	307	0.80