YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.91
Transmembrane Helix	16	39	0.88
Cytoplasmic	40	49	0.91
Transmembrane Helix	50	72	0.88
Non-Cytoplasmic	73	91	0.88
Transmembrane Helix	92	112	0.89
Cytoplasmic	113	117	0.69
Transmembrane Helix	118	142	0.80
Non-Cytoplasmic	143	151	0.83
Transmembrane Helix	152	172	0.94
Cytoplasmic	173	239	0.96
Transmembrane Helix	240	261	0.91
Non-Cytoplasmic	262	283	0.88
Transmembrane Helix	284	304	0.96
Cytoplasmic	305	324	0.91
Transmembrane Helix	325	345	0.93
Non-Cytoplasmic	346	352	0.76
Transmembrane Helix	353	374	0.88
Cytoplasmic	375	382	0.91
Transmembrane Helix	383	405	0.92
Non-Cytoplasmic	406	413	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIAQELGIY VVESKGGAIL CLLLSLLCLG TWPALMALLE RRGRLPQHTY LDYSITNFLA  60
   61 AIFIAFVFGG IGESTHEAPS FITQLTQIQD NWPSVLFAMA GGVGLSIGNL ATQYSLAFVG 120
  121 LSVTEVTAAS ITVVVGTTVN YFLDNGLNRA DILFSGVGCF MVAVCLGSAV HSSNSADIKA 180
  181 KLGKLSGDCE TVTPEECQRL FGVEEEEEEE KEMENVKEGS AAFLIALENK RAIKVLGKSM 240
  241 VVGLGITFFA GLSFSLFSPL FNLATNDQWH TLKQGVPKLI VYTAFFYFSL SCFVIAVALN 300
  301 ISFLYKPVLD SPRSSFREYL SDWNGRGWAL AAGLLCGFGN GLQFMGGQAA GYAASDAVQA 360
  361 LPLVSTFWGI YLFGEYRRSS TRTYALLVGM LVMFTVAVGL LMASAGERET RFT