YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20197401, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	31	0.86
Cytoplasmic	32	40	0.86
Transmembrane Helix	41	60	0.92
Non-Cytoplasmic	61	70	0.86
Transmembrane Helix	71	92	0.86
Cytoplasmic	93	101	0.81
Transmembrane Helix	102	123	0.93
Non-Cytoplasmic	124	131	0.71
Transmembrane Helix	132	152	0.94
Cytoplasmic	153	466	0.99
Transmembrane Helix	467	487	0.89
Non-Cytoplasmic	488	496	0.85
Transmembrane Helix	497	518	0.87
Cytoplasmic	519	532	0.74
Transmembrane Helix	533	554	0.87
Non-Cytoplasmic	555	560	0.68
Transmembrane Helix	561	578	0.58
Cytoplasmic	579	586	0.50
Transmembrane Helix	587	610	0.91
Non-Cytoplasmic	611	612	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW MITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAEIGNDG KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS 240
  241 NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV 300
  301 PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV 360
  361 SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSGGDDI GGLDSGEGER EIEKATAGLN 420
  421 KMGSNSTAEL EAAGGDGGGN NGTHMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL 480
  481 VAYRWHVAMP KILQQSISIL SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFIT 540
  541 GPAIMAVAGI AIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST GVIFGMLIAL 600
  601 PITLVYYILL GL