YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLD2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQTKKRYV TSEDLKKHNK PGDLWISIQG KVYDVSDWVK SHPGGEAAIL NLAGQDVTDA  60
   61 FIAYHPGTAW HHLEKLHNGY HVRDHHVSDV SRDYRRLAAE FSKRGLFDKK GHVTLYTLTC 120
  121 VGVMLAAVLY GVLACTSIWA HLISAVLLGL LWIQSAYVGH DSGHYTVTST KPCNKLIQLL 180
  181 SGNCLTGISI AWWKWTHNAH HIACNSLDHD PDLQHIPIFA VSTKFFNSMT SRFYGRKLTF 240
  241 DPLARFLISY QHWTFYPVMC VGRINLFIQT FLLLFSKRHV PDRALNIAGI LVFWTWFPLL 300
  301 VSFLPNWQER FIFVFVSFAV TAIQHVQFCL NHFAADVYTG PPNGNDWFEK QTAGTLDISC 360
  361 RSFMDWFFGG LQFQLEHHLF PRLPRCHLRT VSPVVKELCK KHNLPYRSLS WWEANVWTIR 420
  421 TLKNAAIQAR DATNPVLKNL LWEAVNTHG

Type	Start	End	Confidence
Cytoplasmic	1	111	0.99
Transmembrane Helix	112	133	0.92
Non-Cytoplasmic	134	137	0.82
Transmembrane Helix	138	158	0.90
Cytoplasmic	159	175	0.85
Transmembrane Helix	176	193	0.91
Non-Cytoplasmic	194	252	0.88
Transmembrane Helix	253	275	0.89
Cytoplasmic	276	283	0.84
Transmembrane Helix	284	304	0.92
Non-Cytoplasmic	305	449	0.51