YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20177071
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.96
Transmembrane Helix	63	84	0.90
Non-Cytoplasmic	85	94	0.76
Transmembrane Helix	95	119	0.86
Cytoplasmic	120	136	0.77
Transmembrane Helix	137	156	0.83
Non-Cytoplasmic	157	187	0.85
Transmembrane Helix	188	207	0.93
Cytoplasmic	208	215	0.81
Transmembrane Helix	216	235	0.96
Non-Cytoplasmic	236	272	0.93
Transmembrane Helix	273	295	0.85
Cytoplasmic	296	307	0.87
Transmembrane Helix	308	330	0.91
Non-Cytoplasmic	331	374	0.71
Transmembrane Helix	375	397	0.87
Cytoplasmic	398	428	0.64
Transmembrane Helix	429	451	0.83
Non-Cytoplasmic	452	456	0.52
Transmembrane Helix	457	476	0.88
Cytoplasmic	477	486	0.61
Transmembrane Helix	487	506	0.84
Non-Cytoplasmic	507	509	0.53
Transmembrane Helix	510	528	0.86
Cytoplasmic	529	632	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPEAVIVLL PFHQESLPRL DNYRISMRNL KRPSIGELQG EAVDQSITIP EPEPEATGGH  60
   61 IKLGWIVGVL IPCLLNIWGV MLFLRLSWVV AESGILQSLI IITISAVVCV ITTLSLSAIS 120
  121 TNGEVKGGGV YFIISRSLGP EFGASVGVVF AFANAVSASM NTIGFCESLN VLLKNNDLKI 180
  181 VDNGINDIRI VGSITVLVLI LICCVGMEWE TKAQNFLIVT IVLAIFNFLI GAAIGPQGNE 240
  241 EQISRGFVGF SWATLKENFG SDYRYAEGVN HDFFSVFAIF FPSVTGIQAG ANICGDLKDA 300
  301 GAAIPKGTFW SLLISMSSYA LFVLFAGGAA VRDASGIPAD LVNGTIVSSE LPCMATGNCT 360
  361 WGLFNSYEMM QEMSLWGPLI YAGCFAATLS TALTNLLSVP RLVQALGIDQ IYPGLIFFSK 420
  421 PYGKHGEPYR GYVLTFFITT GFLLIGELNL IAPLISTFYL ASYALINFCT FHAAFVKPLG 480
  481 WRPTFKYYNA WLSLFGFAMC VAIMFLINYV AAIITFGIIF ALYLVVMYRK PEANWGSTTQ 540
  541 AQQYKAALMA VHRLQNVSDH VKLPSPGAGA LRRSQDQTAT RGLWLPADQE QLPHVRGKYN 600
  601 TGAGGLQEPA APGEGWTKVP GCPQDQGLLQ CD