YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14718604
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGRAL PETPTWAVAV VCAVIVLVSV AMEHGLHKLG HWFHKREKKA MGEALGKIKA  60
   61 ELMLLGFISL LLTVAQTPIS KICIPESAAN IMLPCKAGQD IVKGLKGKKD HRRRLLWYTG 120
  121 EEESHRRSLA GAAGEDYCAQ SGKVALMSSG GMHQLHIFIF VLAVFHVTYC VITMGLGRLK 180
  181 MKKWKKWESQ TNSLEYQFAI DPSRFRFTHQ TSFVKRHLGS FSSTPGLRWI VAFFRQFFGS 240
  241 VTKVDYLTMR QGFINAHLSQ NSKFDFHKYI KRSLEDDFKV VVGISLPLWF VGILVLFLDI 300
  301 HGLGTLIWIS FVPLIIVLLV GTKLEMVIMQ MAQEIQDRAT VIQGAPVVEP SNKYFWFNRP 360
  361 DWVLFFIHLT LFHNAFQMAH FVWTMATPGL KKCFHENIWL SIVEVIVGIS LQVLCSYITF 420
  421 PLYALVTQMG SNMKKTIFEE QTMKALMNWR KKAMEKKKVR DADAFLAQMS VDFATPASSR 480
  481 SASPVHLLQD HRARLDDPPS PITVASPPAP EEDIYPVPAA AAFCQLLDDP PDRRWMASLS 540
  541 ADIPDFDFSF SAQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.93
Transmembrane Helix	15	37	0.92
Cytoplasmic	38	57	0.89
Transmembrane Helix	58	79	0.85
Non-Cytoplasmic	80	154	0.98
Transmembrane Helix	155	177	0.94
Cytoplasmic	178	277	0.97
Transmembrane Helix	278	298	0.91
Non-Cytoplasmic	299	304	0.70
Transmembrane Helix	305	324	0.90
Cytoplasmic	325	361	0.92
Transmembrane Helix	362	383	0.87
Non-Cytoplasmic	384	404	0.80
Transmembrane Helix	405	426	0.89
Cytoplasmic	427	554	0.93