YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10198653
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRFRDFVKSA PRNYSVVIMF TAMAPARQCV ICRHAHDEYT IVANSYRYSQ TYSNKLFFAM  60
   61 VDFDEGSDVF QLLRLNTAPV FIHFPAKGKP KPADTMDIQR VGVSAEVIGK WIQERTDIQI 120
  121 RIFRPPNYSA TVAILMLTAF VGGFLYLRRN NLDFLYNKQM WGFLAVIFCF AMVSGQMWNH 180
  181 IRSPPFVHKG QNGGIAYIHG SSQGQLVIET YIVIFLNAMI VAGMILLTES GWQSDPRKGK 240
  241 IAAVVCLVLV AVFFSLILSI FRSKAQGYPY SFLFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	127	0.79
Transmembrane Helix	128	147	0.95
Cytoplasmic	148	159	0.69
Transmembrane Helix	160	178	0.95
Non-Cytoplasmic	179	206	0.77
Transmembrane Helix	207	228	0.90
Cytoplasmic	229	240	0.71
Transmembrane Helix	241	261	0.96
Non-Cytoplasmic	262	275	0.78