YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20151841
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPETDSEH SETDSVGSST DSQSSGLGAV RHQRRSAQRT DVFSLKAMAP RPNAGPGGWL  60
   61 CLLLPLALTV RLLRHATPAC KDQARMQCLL TVAAGGMALE TLCFFIYAFV KTGILVKCLV 120
  121 SLLPGVATSL SFYLLVDTSL TFAIIVGFVM TSAYQQIYIY TLRGFQRSFT YGEASVFVQG 180
  181 LVLFALSAIH RLGGFFCGGS WPTEEFDTLN MIMVNALFCL LVFCVALVLF PTLRKPCRFY 240
  241 LWTVMLLLAV TCMPVTRPLP LLALVQFLLR DQERLAILVF YMLLVVLTCL TVAWQIGSSA 300
  301 KANTRVRKIF HLLIVMVYIP GLIFECALLY LATGVALAAF VVLELLRLLK IPPFADRLAV 360
  361 AFSTLRTKRT PESWL

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.46
Transmembrane Helix	54	73	0.81
Cytoplasmic	74	87	0.51
Transmembrane Helix	88	110	0.87
Non-Cytoplasmic	111	129	0.49
Transmembrane Helix	130	159	0.76
Cytoplasmic	160	168	0.87
Transmembrane Helix	169	192	0.84
Non-Cytoplasmic	193	210	0.86
Transmembrane Helix	211	230	0.97
Cytoplasmic	231	238	0.81
Transmembrane Helix	239	261	0.88
Non-Cytoplasmic	262	274	0.89
Transmembrane Helix	275	297	0.91
Cytoplasmic	298	308	0.87
Transmembrane Helix	309	343	0.81
Non-Cytoplasmic	344	375	0.48