YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20151789
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQKEGNGY RRSDSKTTGH ADAEAATQTA GGDEDNSLDA ILVRIGQFGR YQIINYVLLC  60
   61 VPMLFNAFFS ISYVFTASTV VHRCTVPQCD SPSSVYEEDW LGLTIPKKNS AWDDCHRYAA 120
  121 NISDAISGYT DPSGQYCLKE YFTITSETCG RDFKFRDEEK TISTEFGIYC EDEWKLSMVG 180
  181 TINNVGQFVG IPLGGYFADR YGRRTMLAVA GSVSALMGVI RSLSSNYSMF LVFEFLDMAV 240
  241 GSTLFPTAFL LAIELVGPKR RVAAATIITI FYALGEAFLG FLVSQVQHWR WLLRVLYAPA 300
  301 VLQILFLWIL PESVRWLLSQ GAEEKASNVL RRAARINQRP LPEEQLNDLL TSNRQAQPGQ 360
  361 REPVSNNASR SILLAADSKL LPLLVHAHAD RPGS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.69
Transmembrane Helix	53	75	0.71
Non-Cytoplasmic	76	175	0.52
Transmembrane Helix	176	197	0.39
Cytoplasmic	198	204	0.73
Transmembrane Helix	205	224	0.87
Non-Cytoplasmic	225	232	0.67
Transmembrane Helix	233	253	0.90
Cytoplasmic	254	261	0.71
Transmembrane Helix	262	283	0.91
Non-Cytoplasmic	284	290	0.69
Transmembrane Helix	291	310	0.90
Cytoplasmic	311	394	0.84