YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20151681
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.96
Transmembrane Helix	70	92	0.81
Non-Cytoplasmic	93	108	0.82
Transmembrane Helix	109	129	0.89
Cytoplasmic	130	137	0.64
Transmembrane Helix	138	155	0.89
Non-Cytoplasmic	156	164	0.57
Transmembrane Helix	165	187	0.87
Cytoplasmic	188	206	0.79
Transmembrane Helix	207	225	0.89
Non-Cytoplasmic	226	241	0.82
Transmembrane Helix	242	263	0.90
Cytoplasmic	264	329	0.85
Transmembrane Helix	330	344	0.64
Non-Cytoplasmic	345	368	0.75
Transmembrane Helix	369	389	0.85
Cytoplasmic	390	402	0.71
Transmembrane Helix	403	424	0.91
Non-Cytoplasmic	425	443	0.77
Transmembrane Helix	444	463	0.93
Cytoplasmic	464	473	0.77
Transmembrane Helix	474	498	0.82
Non-Cytoplasmic	499	504	0.83
Transmembrane Helix	505	528	0.90
Cytoplasmic	529	557	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRATEIGSE KTLPALAELS QVGYERDARD VEWVAWRGER AQLKLAHRSS LPNYGFAPPT  60
   61 IRMKYRYPRA VFFVLATKFF EAFAANGIRT VLALYLRDDL NFTESFSTVV LHIFNFFGQF 120
  121 CPIIGAILAD SYIGNVRTIS GFSFIYAFGW LLLTLKSLPA MGLPMVLLVS IALLFIAVGN 180
  181 GSIRACITSL GALQFKLPEQ SVHLAEYFSF YYFVYYFGIF LSKILPPLVR ANTQCFDKAE 240
  241 CYPAVFGTLG AAFMMAWFIF LVGKWFYKSE KLSDDNILFK FCGCIKTALV EKWRRRKSTK 300
  301 RSNYWLHNAV VAYDMGFVND VSRVLRISKL FIPLPFYFAL LAQQDSSWTF QATQMNTTLM 360
  361 GVTIQPDQAK AVGPIFLFML IPLWQYITVP LLRRYFNWEL QPLHSVTVGG IFSAGAFFCA 420
  421 GALQERIKNS PPQTVNIAWQ LPQFLLLMMG ELLLSIPGLQ FAFTQAPTSM KSVVTAAWFL 480
  481 NNAFGNLIVV LVTELGMLSS QMAEYFFYAV VMLVCIILYA LLAFDYTLQE RKAGMYVRMD 540
  541 SEAEDRDVPS TSRSGSI