YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20151395
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVYGVEKK TVPTHMKFVM GGTSGMLATC IVQPLDLLKT RMQISGTLGT REYKNSFEVL  60
   61 SKVLKNEGIL SLYNGLSAGL LRQATYTSAK MGVYQMELDW YRKNFGNYPS MVASMTMGIV 120
  121 AGAFGAMCGN PAEVALIRMM SDNRLIPEDR RNYKNVGDAF VRIVKDEGVV ALWRGCLPTV 180
  181 GRAMVVNMVQ LASYSLMKNQ LHGYLSEGIP LHLTAALVSG LLTSVTSMPL DMAKTRIQQM 240
  241 KVIDGKPEYS GTIDVLKKVL KNEGAFAVWK GFTPYLMRMG PHTIFSFVFL EQMNKAYSKH 300
  301 MLSDSLSDSV P

Type	Start	End	Confidence
Cytoplasmic	1	17	0.72
Transmembrane Helix	18	37	0.60
Non-Cytoplasmic	38	109	0.58
Transmembrane Helix	110	132	0.80
Cytoplasmic	133	169	0.64
Transmembrane Helix	170	192	0.50
Non-Cytoplasmic	193	208	0.77
Transmembrane Helix	209	230	0.81
Cytoplasmic	231	311	0.84