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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17530182
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPAWPRVP RPETAVARTL LLGWVFAQVA GASGTTNTVA AYNLTWKSTN FKTILEWEPK  60
   61 PVNQVYTVQI STKSGDWKSK CFYTTDTECD LTDEIVKDVK QTYLARVFSY PAGNVESTGS 120
  121 AGEPLYENSP EFTPYLETNL GQPTIQSFEQ VGTKVNVTVE DERTLVRRNN TFLSLRDVFG 180
  181 KDLIYTLYYW KSSSSGKKTA KTNTNEFLID VDKGENYCFS VQAVIPSRTV NRKSTDSPVE 240
  241 CMGQEKGEFR EIFYIIGAVA FVVIILVIIL AISLHKCRKA GVGQSWKENS PLGGPMEDAK 300
  301 NIKKGPAPFY PLEDGTAGEQ LHKAMKRYAL VPGTIAFTDA HIEVDITYAE YFEMSVRLAE 360
  361 AMKRYGLNTN HRIVVCSENS LQFFMPVLGA LFIGVAVAPA NDIYNERELL NSMGISQPTV 420
  421 VFVSKKGLQK ILNVQKKLPI IQKIIIMDSK TDYQGFQSMY TFVTSHLPPG FNEYDFVPES 480
  481 FDRDKTIALI MNSSGSTGLP KGVALPHRTA CVRFSHARDP IFGNQIIPDT AILSVVPFHH 540
  541 GFGMFTTLGY LICGFRVVLM YRFEEELFLR SLQDYKIQSA LLVPTLFSFF AKSTLIDKYD 600
  601 LSNLHEIASG GAPLSKEVGE AVAKRFHLPG IRQGYGLTET TSAILITPEG DDKPGAVGKV 660
  661 VPFFEAKVVD LDTGKTLGVN QRGELCVRGP MIMSGYVNNP EATNALIDKD GWLHSGDIAY 720
  721 WDEDEHFFIV DRLKSLIKYK GYQVAPAELE SILLQHPNIF DAGVAGLPDD DAGELPAAVV 780
  781 VLEHGKTMTE KEIVDYVASQ VTTAKKLRGG VVFVDEVPKG LTGKLDARKI REILIKAKKG 840
  841 GKIAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle