YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIPL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTLSPAVE AEQIADSTID TVSRLIAGVF SGALTGIFAM AGAFTGAVTG AVAGRAAQYG  60
   61 VLRGAALGAV AGAILSVEVL EASRAYWYLE LSGSRGPSSM ADFVEQLFRG RLVDEQLMST 120
  121 MINSHHWQLR ISDVSYEERE DVYGELEARG LSGDSLRKLP CYIMSSEMVR RQVTHCTICL 180
  181 QDIKTGEITR SLPKCDHTFH LVCVDKWLIR HGSCPICRQA VKD

Type	Start	End	Confidence
Cytoplasmic	1	25	0.79
Transmembrane Helix	26	51	0.81
Non-Cytoplasmic	52	58	0.64
Transmembrane Helix	59	80	0.81
Cytoplasmic	81	223	0.82