YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NLTL5_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHSSFTAT TPLFLIVLLS LSSVSVLGAS HHHATAPAPS VDCSTLILNM ADCLSFVSSG  60
   61 GTVAKPEGTC CSGLKTVLKA DSQCLCEAFK SSASLGVTLN ITKASTLPAA CKLHAPSIAT 120
  121 CGLSVAPSTA PGLAPGVAAA GPETAGFLAP NPSSGNDGSS LIPTSFTTVL SAVLFVLFFS 180
  181 SA

Type	Start	End	Confidence
Signal Peptide	1	28	0.98
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	160	0.97
Transmembrane Helix	161	180	0.62
Cytoplasmic	181	182	0.55