YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20147283, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	131	0.97
Transmembrane Helix	132	148	0.62
Cytoplasmic	149	162	0.53
Transmembrane Helix	163	182	0.67
Non-Cytoplasmic	183	195	0.80
Transmembrane Helix	196	215	0.91
Cytoplasmic	216	223	0.72
Transmembrane Helix	224	241	0.96
Non-Cytoplasmic	242	249	0.74
Transmembrane Helix	250	272	0.90
Cytoplasmic	273	280	0.81
Transmembrane Helix	281	299	0.88
Non-Cytoplasmic	300	308	0.77
Transmembrane Helix	309	328	0.72
Cytoplasmic	329	343	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNLPWVLL IIVVSCLVST LEASEGDSDS LYKSCVDQCQ KTGCVGDTCF QHCKFSADGK  60
   61 AIDGPWYMQE PLYLRWKQWD CQSDCQYECM MTREEERKRN GERPTKYFGK WPLKHVYGIQ 120
  121 EPVSVAFSAL DLAMQFQGWV SYFILVYYKL PLQPNRKTYY EYNGIVHIYA IIVMNSLFWS 180
  181 SICHSRDVEL TERLDYSSAT VLAGFSLILA ILRSFSIQDQ SVKIMVTAPI LAVVATHILY 240
  241 LNFYNLDEGL HWKVIFGIGG IELVVWGLWA ALTSHPSKWK LRAFLISSIL TLCLRMFDFP 300
  301 PYKGYIDAHA LWRGAGIPLS YLWWSFVCDD AVFRTTVNLK KSK