YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT314_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	32	0.93
Non-Cytoplasmic	33	47	0.83
Transmembrane Helix	48	69	0.89
Cytoplasmic	70	79	0.87
Transmembrane Helix	80	100	0.92
Non-Cytoplasmic	101	109	0.68
Transmembrane Helix	110	130	0.91
Cytoplasmic	131	137	0.75
Transmembrane Helix	138	157	0.91
Non-Cytoplasmic	158	163	0.77
Transmembrane Helix	164	183	0.91
Cytoplasmic	184	197	0.83
Transmembrane Helix	198	218	0.94
Non-Cytoplasmic	219	230	0.92
Transmembrane Helix	231	254	0.88
Cytoplasmic	255	259	0.82
Transmembrane Helix	260	282	0.75
Non-Cytoplasmic	283	286	0.70
Transmembrane Helix	287	306	0.79
Cytoplasmic	307	340	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRSKGFMR AEFVTYAYIL LYIALSSGQI FFNKWVLSSK EINFPYPLGL TLLHMIFSSV  60
   61 LCFLLTKVLK IVKVEEGMTL EIYVTSVIPI GAMFAMTLWL GNTAYLYISV AFAQMLKAIM 120
  121 PVAVFILGVA AGLEMMSCRM LLIMSIISFG VLVASYGELN INWIGVVYQM GGVVGEALRL 180
  181 IFMELLVKRK GIKLNPISLM YYVSPCSAIC LFVPWIFLEK SKIDGNGPWN FHFVVLTLNS 240
  241 LCTFALNLSV FLVISHTSAL TIRVAGVVKD WVVVLVSALL FADTKLTIIN LFGYAIAIAG 300
  301 VAAYNNHKLK KEASKVVTTE TPGDAESIPL VSQGNTNTER