YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y5713_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSACINGLCR AVTVSLLLLL LSFSFSSACS NGNCQLLDSC SSATDCVSGL YCGDCPAVGR  60
   61 SKPVCTRGQA TSPTSIINGL PFNKYTWLMT HNAFSNANAP LLPGVERITF YNQEDTITNQ 120
  121 LQNGVRGLML DMYDFNNDIW LCHSLRGQCF NFTAFQPAIN ILREVEAFLS QNPTEIVTII 180
  181 IEDYVHRPKG LSTLFANAGL DKYWFPVSKM PRKGEDWPTV TDMVQENHRL LVFTSVAAKE 240
  241 DEEGVAYQWR YMVENESGDP GVKRGSCPNR KESQPLNSKS SSLFLMNYFP TYPVEKDACK 300
  301 EHSAPLAEMV GTCLKSGGNR MPNFLAVNFY MRSDGGGVFE ILDRMNGPVL CGCETLSACQ 360
  361 PGAAYGSCKN VTVQTRTPSM DSTAGSNSGG SYSGSVQFSR SLASVAQLNN IVVFCFSLLP 420
  421 LLIFLL

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	404	0.99
Transmembrane Helix	405	425	0.82
Cytoplasmic	426	426	0.86