YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5817414
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.94
Transmembrane Helix	5	25	0.86
Cytoplasmic	26	31	0.88
Transmembrane Helix	32	55	0.86
Non-Cytoplasmic	56	80	0.93
Transmembrane Helix	81	102	0.92
Cytoplasmic	103	111	0.89
Transmembrane Helix	112	132	0.92
Non-Cytoplasmic	133	138	0.80
Transmembrane Helix	139	159	0.93
Cytoplasmic	160	170	0.90
Transmembrane Helix	171	193	0.86
Non-Cytoplasmic	194	214	0.91
Transmembrane Helix	215	236	0.86
Cytoplasmic	237	252	0.83
Transmembrane Helix	253	273	0.91
Non-Cytoplasmic	274	280	0.67
Transmembrane Helix	281	303	0.90
Cytoplasmic	304	316	0.75
Transmembrane Helix	317	335	0.83
Non-Cytoplasmic	336	345	0.61
Transmembrane Helix	346	365	0.69
Cytoplasmic	366	384	0.66
Transmembrane Helix	385	407	0.87
Non-Cytoplasmic	408	416	0.69
Transmembrane Helix	417	441	0.84
Cytoplasmic	442	540	0.73
Transmembrane Helix	541	562	0.90
Non-Cytoplasmic	563	599	0.71
Transmembrane Helix	600	618	0.80
Cytoplasmic	619	702	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIXPFVPLPV PMLIGVGLLL FPTATKNLRR MWAFPSILLL SIVMIFSTNL SIQQINSNSI  60
   61 YQYVWSWTLD NDFSFEFGYL IDPLTSIMSM LITTVGIMVL VYSDNYMAHD QGYLRFFAYM 120
  121 SFFSTSMLGL VTSSNLIQIY IFWELVGVCS YLLIGFWFSR PLAANACQKA FVTNRVGDFG 180
  181 LLLGILGFYW ITGSFEFRDL FEIFNNLIYN NEVNPPFVTL CAALLFAGAV AKSAQFPLHV 240
  241 WLPDAMEGPT PISALIHAAT MVAAGIFLVA RLLPLFIVIP YIMNLISLIG IITVLLGATL 300
  301 ALAQKDIKRG LAYSTMSQLG YMMLALGMGS YRSALFHLIT HAYSKALLFL GSGSVIHSME 360
  361 TVVGYSPDKS QNMVLMGGLT KHVPITKTSF LLGTLSLCGI PPLACFWSKD EILNDSWLYS 420
  421 PIFAIIAWTT AGLTAFYMFR IYLLTFEGHL NVHFQNYSGN KNTPLYSISL WGKGCSKRIK 480
  481 KNFRLLRMNN NESSSFFSKK TYRSDENVRK RNGARPFINI VHFNNKKAYS YPYPYESDNT 540
  541 MLFPLLVLVL FTLFVGSLGI PFNQERTDLD ILSKWLAPSI NLLHQKSEDL TDWYDFLKDT 600
  601 IFSVSIAYLG ILLASFLYKP IYSSFQNLDL INSFVKAGPK RSRWDKIVNV LYDWSYNRAY 660
  661 IDAFYTTSFN GSIRGLAQLT HFFDRRVIDG ITNGVGVMSF FV