YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4B_GADMO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMDRGFYRK VDVPDHAHYV IAFFVLIIGV VGVTGNALVM YAFLCNKKLR TPPNYFIMNL  60
   61 AVSDFLMAIT QSPIFFINSL FKEWIFGETG CRMYAFCGAL FGITSMINLL AISLDRYIVI 120
  121 TKPPQAIRWV SGRRTMVVIL LVWLYSLAWS LAPLLGWSSY IPEGLMTSCT WDYVTSTPAN 180
  181 KGYTLMLCCF VFFIPLGIIS YCYLCMFLAI RSAGREIERL GTQVRKSTLM QQQTIKTEWK 240
  241 LTKVAFVVII VYVHSWSPYA CVTLIAWAGY GSHLSPYSKA VPAVIAKASA IYNPFIYAII 300
  301 HSKYRDTLAE HVPCLYFLRQ PPRKVSMSRA QSECSFRDSM VSRQSSASKT KFHRVSSTST 360
  361 ADTQVWSDVE LDPMNHEGQS LRTSHSLGVL GRSKEHRGPP AQQNRQTRSS DTLEQATVAD 420
  421 WRPPLTALRC DRNFLPQPTH PPYKMAAATP LQATTVDNVT PEHWNKHPNN NHKNHNNRHN 480
  481 GNNNNEEHEY SGKGGRHCQN HPHHIDVKNS ISNCKKTCEK DTFSKEPVPC NAADDVRFSP 540
  541 RSAHTIQHAM GTPFRYMPEG DIACQERLST DRSQRGDPLP DSKSLNCTGD VPVSAQRCSF 600
  601 PHETSRNLEE SFMAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.94
Transmembrane Helix	20	44	0.91
Cytoplasmic	45	54	0.91
Transmembrane Helix	55	77	0.89
Non-Cytoplasmic	78	92	0.89
Transmembrane Helix	93	114	0.91
Cytoplasmic	115	134	0.86
Transmembrane Helix	135	157	0.88
Non-Cytoplasmic	158	182	0.94
Transmembrane Helix	183	205	0.92
Cytoplasmic	206	245	0.91
Transmembrane Helix	246	269	0.87
Non-Cytoplasmic	270	615	0.72