YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47575691, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	28	0.77
Non-Cytoplasmic	29	54	0.91
Transmembrane Helix	55	75	0.93
Cytoplasmic	76	87	0.87
Transmembrane Helix	88	108	0.95
Non-Cytoplasmic	109	129	0.91
Transmembrane Helix	130	150	0.89
Cytoplasmic	151	209	0.97
Transmembrane Helix	210	232	0.86
Non-Cytoplasmic	233	240	0.78
Transmembrane Helix	241	262	0.87
Cytoplasmic	263	271	0.85
Transmembrane Helix	272	293	0.92
Non-Cytoplasmic	294	303	0.85
Transmembrane Helix	304	324	0.90
Cytoplasmic	325	343	0.78
Transmembrane Helix	344	361	0.93
Non-Cytoplasmic	362	364	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATKSHLKL IPIIFFILII SILTPKAYSQ SEEDECSTEN TSSCNDKSGA VPLKIIALVS  60
   61 ILVTSMIGVS FPLVTRSIPA FHPDRNLFVI VKCFAGGIIL ATGFMHVLPD SYAMLQSSCL 120
  121 KENPWHKFPF SGFVAMLSAI LTLMVDSMAT SIYSRRCRTG VIPDKGETPA LEVDQEMAVV 180
  181 GAGHGHFHAH NHVVDKGENG DSQQLSRYRV VAMVLELGII VHSVVIGLSL GASNNTCTIK 240
  241 GLVAALCFHQ MFEGMGLGGC ILQAEYKFMK KAIMVFFFST TTPFGIAIGM AMTKSYKENS 300
  301 PKSLIAVGLL NASSAGLLIY MALVDLLAAD FMGPKLQRSI KLQIKSYIAV LLGAGGMSVL 360
  361 AKWA