YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10334767
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASKNERKV HYSIRKFSIG VASVAVASLF MGSVVHATEK EVTTQVATSS NKANKSQTEH  60
   61 MKAAKQVDEY IEKMLSEIQL DRRKHTQNVG LLTKLGAIKT EYLRGLSVSK EKSTAELPSE 120
  121 IKEKLTAAFE QFKKDTLKSG KKVAEAQKKA KDQKEAKQEI EALIVKHKGR EIDLDRKKAK 180
  181 AAVTEHLKKL LNDIEKNLKK EQHTHTVELI KNLKDIEKTY LHKLDESTQK AQLQKLIAES 240
  241 QSKLDEAFSK FKNGLSSSSN SGSSTKPETP QPETPKPEVK PELETPKPEV KPEPETPKPE 300
  301 VKPEPETPKP EVKPELETPK PEVKPEPETP KPEVKPEPET PKPEVKPEPE TPKPEVKPEL 360
  361 ETPKPEVKPE LETPKPEVKP EPETPKPEVK PELETPKPEV KPEPETPKPE VKPELETPKP 420
  421 EVKPEPETPK PEVKPELETP KPEVKPEPET PKPEVKPEPE TPKPEVKPEP ETPKPEVKPE 480
  481 LETPKPEVKP ELETPKPEVK PEPETPKPEV KPELETPKPE VKPELEIPKP EVKPDNSKPQ 540
  541 ADDKKPSTPN NLSKDKQSSN QASTNENKKQ GPATNKPKKS LPSTGSISNL ALEIAGLLTL 600
  601 AGATILAKKR MK

Type	Start	End	Confidence
Signal Peptide	1	37	0.95
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	589	0.99
Transmembrane Helix	590	607	0.84
Cytoplasmic	608	612	0.78