YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25520839
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKAYWQVS GYGKGVNGYG RTTSSVNTRL NRPVPYRAFG FGDWIFMEQA GLAAATHDVS  60
   61 LWALFMQAGF IVKFVMIGLI AASVWTWAIV FDKYVSFGKA KRQFDQFEQV FWSGQSLEEL 120
  121 YRTLAERQNV GLAAIFVSAM REWKKSFERG ARSPIGLQMR IDRAMDVTIA REGEQYEARL 180
  181 GSLATIGSAG PFIGLFGTVV GIMTSFQAIA GSKSTNLAVV APGIAEALLA TAIGLVAAIP 240
  241 AVIAYNKFTA DAHKLSARME GFADEFSAIL SRQIDEKLQT RQAAQ

Type	Start	End	Confidence
Cytoplasmic	1	38	0.81
Transmembrane Helix	39	57	0.70
Non-Cytoplasmic	58	69	0.66
Transmembrane Helix	70	91	0.91
Cytoplasmic	92	182	0.93
Transmembrane Helix	183	209	0.79
Non-Cytoplasmic	210	223	0.83
Transmembrane Helix	224	248	0.84
Cytoplasmic	249	285	0.96