YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPNS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.87
Transmembrane Helix	24	42	0.79
Non-Cytoplasmic	43	82	0.91
Transmembrane Helix	83	103	0.92
Cytoplasmic	104	111	0.78
Transmembrane Helix	112	131	0.93
Non-Cytoplasmic	132	136	0.69
Transmembrane Helix	137	158	0.89
Cytoplasmic	159	168	0.91
Transmembrane Helix	169	190	0.93
Non-Cytoplasmic	191	199	0.76
Transmembrane Helix	200	219	0.96
Cytoplasmic	220	278	0.98
Transmembrane Helix	279	300	0.92
Non-Cytoplasmic	301	315	0.93
Transmembrane Helix	316	337	0.94
Cytoplasmic	338	346	0.89
Transmembrane Helix	347	367	0.94
Non-Cytoplasmic	368	374	0.74
Transmembrane Helix	375	397	0.88
Cytoplasmic	398	440	0.73
Transmembrane Helix	441	462	0.91
Non-Cytoplasmic	463	492	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRVGQRDSP AKEEAPPATK KRFLTPGRFV TILCIINLIN YVDRGVIASN GVNGSSKVCD  60
   61 AKGVCSAGTG IQGEFNLTNF EDGLLSSAFM VGLLVASPIF AGLSKRFNPF KLIGVGLTVW 120
  121 TIAVIGCGFS YNFWMIAVFR MFVGVGEASF ISLAAPYIDD SAPVARKNFW LGLFYMCIPA 180
  181 GVALGYVFGG YIGNHLGWRW AFYIEAIAMA VFVILSFCIK PPQQLKGFAD KDSKKPSTSI 240
  241 ETVAPTDAEA SQIKTKTPKS KNLVVLFGKD LKALFSEKVF IVNVLGYITY NFVIGAYSYW 300
  301 GPKAGFGIYK MKNADMIFGG LTIICGIIGT LGGSYVLDRI NATLSNTFKL LAASTLLGAA 360
  361 FCFTAFLMKN MYAFIALFAV GEILIFAPQA PVNFVCLHCV RPNLRPLSMA SSTVLIHILG 420
  421 DVPSSPLYGK MQDHLKNWRK STLIITSILF LAAIIWGIGI FMNSVDRSNE VSEDDEVEED 480
  481 KLESKTENST LA