YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46358506
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIVVHAAA VDRRWLLPLA VGSALSLFLL VLLTTVPFPF FPSSSPSPAL FVEHKLAPTP  60
   61 PASRAAGSLP RIAYVISGSA KDASALRRVL LALYHPRNLY VLHLDAEAPE SDRRDLAAGL 120
  121 AAHPVIAAAG NVRVVERANL VTYRGPTMVA STLHAAAALL WGHSGAGGSD WDWFINLSAS 180
  181 DYPLVTQDDL IHVFSKLPRD LNFIDHTSNI GWKEFQRAKP VIIDPGLYMK KKADVFWIPQ 240
  241 RRSVPTAFKL FTGSAWMALS RSLVEYSIWG WDNLPRTVLM YYSNFISSPE GYFHTVVCNA 300
  301 EEFKNTTVNH DLHYISWDNP PKQHPHYLTM DDLDRMIASD APFARKFHAD EPVLDRIDAE 360
  361 LLSRHAGPDA PTPGGWCAGT GDNGSDPCSV VGNTSFLQPG RGAVRLQRLV TSLLSDEKFH 420
  421 PRQCK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	38	0.83
Non-Cytoplasmic	39	425	0.97