YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19881338
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALGIYLWE TIVFFSLAAS QQAAARKAAS PMPPSEFLDK LMGKVSGYDA RIRPNFKVVD  60
   61 PQGSKSDGTH KKGPPVNVTC NIFINSFGSI AETTMDYRVN IFLRQQWNDP RLAYSEYPDD 120
  121 SLDLDPSMLD SIWKPDLFFA NEKGANFHEV TTDNKLLRIS KNGNVLYSIR ITLVLACPMD 180
  181 LKNFPMDVQT CIMQLESFGY TMNDLIFEWD EKGAVQVADG LTLPQFILKE EKDLRYCTKH 240
  241 YNTGKFTCIE ARFHLERQMG YYLIQMYIPS LLIVILSWVS FWINMDAAPA RVGLGITTVL 300
  301 TMTTQSSGSR ASLPKVSYVK AIDIWMAVCL LFVFSALLEY AAVNFIARQH KELLRFQRRR 360
  361 RHLKEDEAGD GRFSFAAYGM GPACLQAKDG MAIKGNNNNA PTSTNPPEKT VEEMRKLFIS 420
  421 RAKRIDTVSR VAFPLVFLIF NIFYWITYKI IRSEDIHKQ

Type	Start	End	Confidence
Signal Peptide	1	25	0.71
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	260	0.77
Transmembrane Helix	261	282	0.92
Cytoplasmic	283	289	0.62
Transmembrane Helix	290	308	0.70
Non-Cytoplasmic	309	323	0.72
Transmembrane Helix	324	346	0.89
Cytoplasmic	347	426	0.87
Transmembrane Helix	427	448	0.86
Non-Cytoplasmic	449	459	0.82