YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607929, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEIRGSSS GENIEDNVNV VGVAKSKKLF VIIVVLIATG LMYYFFFFNK ESSDNEEDTQ  60
   61 IPRVIEEKEV EKLRKDAGRP AQETAPRILT PPPRLPELPP LVMPTVPDIP VVTKLLKPPV 120
  121 EEEFVEEYNV QEVPSPMGNI APPEREEISL PLPYKTITTE QPSFLGYDKE KRGAPMIAFG 180
  181 GGGGEAAGSE SGDGSVGGKE DARFTAWQGL EGTQSPSVRA TRVGDTRYII LQGHMIDAVL 240
  241 ETAINSDISG VLRAVVSRDV YASSGDAVVI PKGSRLIGSY FFDSAGNNVR VDVNWSRVIL 300
  301 PHGVDIQIAS SGTDELGRNG ISGVVDNKVG SILTSTIFLA GISLGTAYVT EQIPSLRTET 360
  361 VKVETPADGK DGKKTTSSSL STKIVSDAIK DFSDSMKEIV NKYSNRTPTV YVDQGTVMKV 420
  421 FVNQDVVFPR DAVR

Type	Start	End	Confidence
Cytoplasmic	1	28	0.95
Transmembrane Helix	29	47	0.95
Non-Cytoplasmic	48	434	0.97