YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48098347
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKDYSPIVQ ALLGTLFTWA LTAAGAALVI VIRGKQRKLL DISLGFAGGV MIAASYWSLL  60
   61 APAIEMATKS KIYGAEGEYA FVPIGVGFLI GAAFVYGTDA LISSLGIQSP NVLLAMQSVG 120
  121 TKQRRKILAK LKSDEDLDDY DPYNDVQISD GKMYTQIEST TIDGFYEQNT RRRQIANINR 180
  181 PTEQGEIGTI YDDPNNECRN NQWKRVLLLV VAITVHNIPE GLAVGVGFAA VGNSASATFE 240
  241 NARNLAIGIG IQNFPEGLAV SLPLQAAGIS TLKSFWYGQL SGMVEPLAGV LGAAGVTFAE 300
  301 PVLPYALAFA AGAMIYVVID DIVPEAHQSG NGKLASWAAI VGFLVMMSLD VGLG

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.87
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	39	0.80
Transmembrane Helix	40	60	0.92
Non-Cytoplasmic	61	78	0.79
Transmembrane Helix	79	102	0.81
Cytoplasmic	103	207	0.94
Transmembrane Helix	208	231	0.64
Non-Cytoplasmic	232	253	0.56
Transmembrane Helix	254	268	0.49
Cytoplasmic	269	274	0.50
Transmembrane Helix	275	297	0.66
Non-Cytoplasmic	298	301	0.50
Transmembrane Helix	302	323	0.75
Cytoplasmic	324	333	0.55
Transmembrane Helix	334	353	0.91
Non-Cytoplasmic	354	354	0.67