YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14518332, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLDKTCVI IGASHAGVNC AFALRKEGWQ GGIVLYDADP SLPYHRPPLS KAYLTSDAGI  60
   61 EKYLLKSAES YEKDNITLRL GIQVSAIDRT HKILTLNDGN TRSYDKLVIA TGARPIIPPT 120
  121 KGIKTAKNLY PLRNAADVQN IRQALESNEN KRVVIVGAGY IGLEIAASLK NRGAQVTVLE 180
  181 REDRVLARVT APEMSAYFQQ LHVSQGVEIV TNKNVVSIAP RNGFNTITCS DGTQYDADVI 240
  241 VMGVGIRVNL ELAEDAGLNI SNGICVNAAG QTNDEDIYAI GDCTLHYNPH YNRHIRLESV 300
  301 QNAVDQAKVT AAAICGKEVA YNAIPWFWSD QYDVKLQIVG LSSGYNELLI RREDDGRKFS 360
  361 SWYFKDDELL AVDAINNAKA YVIATKFIKE RRKVDKIKLT DASVALSPLN LSAESHD

Type	Start	End	Confidence
Signal Peptide	1	20	0.64
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	417	0.99