YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27413547
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCSCCGVTQ QKAWVFGLGT FFAVSGLLAI ICWPGFIDSE IMKALPLTPT SKTFEKWEEL  60
   61 PIPVYVYMYL WNWTNAADVQ ANGVKPIFAQ LGPYVYREER KKMDLEWHDN GTVTFNPRRT 120
  121 WFWEEELSGG KQTDLITAPH LPSLAASNQM RNSNVFLKFM FNEALNANGG HLFVTHTAAE 180
  181 WLFESFYDEF LHYAMTLNNP LVPKIESDHF AWFLNRNGSK DFEGPFTVHT GVGDIKEMGE 240
  241 IKYWKGQNHT GWYDGECGRL NGSTTDLFVP DEPKEKALTI FIPDTCRIIN LEFTGQSETI 300
  301 QGITGWKYEI TPNTFDNGQI NGNAKCWCPL ERQPDNCPAT GATDLGPCAD GVPMYLSADH 360
  361 FMYADESYGS TISGYNPNYD QNNFYIIMER KMGVPLKVNA NVMITLYIEP DSVIDILKGL 420
  421 PSFYAPLFTT ASRAEIDEAL ASELRLALNL PAIGRYTGVG FLCLGCILIA VGILLTIKRK 480
  481 WYGQAELDKL ALKDNEETPY EPEVPANVVE RNF

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	37	0.88
Non-Cytoplasmic	38	451	0.93
Transmembrane Helix	452	477	0.85
Cytoplasmic	478	513	0.93