YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19699142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS  60
   61 LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ RKTLSTGTVI LISAVAVLLL 120
  121 NPLLAPPAFA SFQTAAKSGW LTSAWTGFLA GCLHTLSGPD HLAALAPLSI GRSKMESAAV 180
  181 GALWGCGHDA GQVIFGLLFL LLKDRLHIEV LQTWGTRIVG LTLVIIGAMG IKEASEIPEP 240
  241 CVALETDISM VSTEKEALPL PKKKKIGFAT FATGVVHGLQ PDALMIVLPA LALPSRLAGS 300
  301 AFLIMFLVGT VIAMGSYTAF IGSCSEALKE KVPRITEKLT WVSSLVAIGL GLGIVISPFF 360
  361 GFSLY

Type	Start	End	Confidence
Cytoplasmic	1	103	0.95
Transmembrane Helix	104	125	0.88
Non-Cytoplasmic	126	140	0.73
Transmembrane Helix	141	163	0.78
Cytoplasmic	164	179	0.78
Transmembrane Helix	180	202	0.85
Non-Cytoplasmic	203	209	0.79
Transmembrane Helix	210	231	0.78
Cytoplasmic	232	267	0.90
Transmembrane Helix	268	291	0.81
Non-Cytoplasmic	292	299	0.76
Transmembrane Helix	300	321	0.94
Cytoplasmic	322	338	0.93
Transmembrane Helix	339	362	0.90
Non-Cytoplasmic	363	365	0.89