YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHCA5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD  60
   61 GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA GILFTDLLRT TGIRNLPVWY 120
  121 EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG 180
  181 YPGGPLLNPL GLAKDVQNAH DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS 240
  241 NPWHKTIIQT LFTSTS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.63
Transmembrane Helix	90	108	0.47
Non-Cytoplasmic	109	128	0.58
Transmembrane Helix	129	143	0.34
Cytoplasmic	144	211	0.64
Transmembrane Helix	212	230	0.56
Non-Cytoplasmic	231	256	0.87