YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19698516
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSHIGSWI LVLFVAMWSD VGLCKKRPKP GGGWNTGGSR YPGQGSPGGN RYPPQGGGGW  60
   61 GQPHGGGWGQ PHGGGWGQPH GGGWGQPHGG GGWGQGGSHS QWNKPSKPKP NMKHVAGAAA 120
  121 AGAVVGGLGG YMLGSAMSRP LIHFGNDYED RYYRENMYRY PNQVYYRPVD QYSNQNNFVH 180
  181 DCVNITVKQH TVTTTTKGEN FTETDIKIME RVVEQMCITQ YQRESQAYYQ RGASVILFSP 240
  241 PPVILLISFL IFLIVG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.34
Transmembrane Helix	6	24	0.38
Cytoplasmic	25	113	0.47
Transmembrane Helix	114	135	0.80
Non-Cytoplasmic	136	232	0.53
Transmembrane Helix	233	255	0.88
Cytoplasmic	256	256	0.52