YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113196859, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPVLHATL LLLSAFLALT QTKNQSFAGS HFMQYLVTTT SSQPGLQDSH VCIVGHVDYM  60
   61 PFMRFDSDGA AQRIQTRGPW MKQMGPEYLE MERKNAEGYS HRARENLRFA IQVYNQSDKV 120
  121 SHTFQCLIGC DMGPDGRLLQ AHYSHAFDGQ HYISLNSDLT TWSVGDSTAQ ITKRRWEADG 180
  181 VAEALSHFLK VSCVEHLQKH LETGKETLQR SDPPKAHVTL HPRPEGDVTL RCWALGFYPA 240
  241 DITLTWQLNG EDLTQDMELV ETRPAGDGTF QKWASVVVPN GEEQKYTCLV EHEGLPEPLT 300
  301 LRWKPATWPV VGITVGVVLL GFVIIGALIA IVTMRKKRA

Type	Start	End	Confidence
Signal Peptide	1	28	0.89
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	307	0.99
Transmembrane Helix	308	332	0.92
Cytoplasmic	333	339	0.92