YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27374240
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSTDSEKCQ GSKSLAICCL LLHLLLSIRP AVAQTQSSQR YLHNVDNSSN NNERLQQILK  60
   61 GSGAGSGATQ LNWPQPSKQT VLNVKTGLAK LNNSYVYQNA WPANNVKLGA VTAVSFDQAG 120
  121 NVVIFHRVDR VWGQNTFDTR NQFQEKFRGP IRESTVLALE PATGKVQYDW GKNLFYMPHG 180
  181 LTVDPEDNVW LTDVAMHQVF KFQPRGGDGK PVLTLGDAFQ PGSGRKFCKP TSVAVLDNGD 240
  241 FFVADGYCNA RILKYSRKGE LILSWGRNSF SGISYDVAPK NFFAIPHALT LVPELQLLCA 300
  301 ADRENGRVQC FSSNNGTFHS QYHNQLIGDR IFSMAYTPAA GGQLVIVNGP IAELGINPEH 360
  361 YNEVHGFVLS MRSKQLVSKF GPNNLEFQNP HDVAVTVDGN EIYVAELNPM RIHKFVHRSL 420
  421 AKPMSLSATK DSSNSAISRA VEIDQATPEA VHHPSGKAIL VASLMLLFAG STFALALIFA 480
  481 QRRKRGCLPF GARSRRHAWE KSDGFKLGGL LDRDRNGFEK LDQQASDEEQ ETKTLASAQY 540
  541 A

Type	Start	End	Confidence
Signal Peptide	1	33	0.99
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	457	0.99
Transmembrane Helix	458	480	0.91
Cytoplasmic	481	541	0.97