YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B651B_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHMSIMKF LNQILCLSLI LSISMTTLSF AQTCSKYKFS SNNVFDSCND LPFLDSFLHY  60
   61 TYESSTGSLH IAYRHTKLTS GKWVAWAVNP TSTGMVGAQA IVAYPQSDGT VRVYTSPIRS 120
  121 YQTSLLEGDL SFNVSGLSAT YQNNEIVVLA SLKLAQDLGN GGTINTVWQD GSMSGNSLLP 180
  181 HPTSGNNVRS VSTLNLVSGV SAAAGGAGGS SKLRKRNIHG ILNGVSWGIM MPLGAIIARY 240
  241 LRVAKSADPA WFYIHVFCQA SAYIIGVAGW ATGLKLGGDS PGIQYSTHRA IGIALFSLAT 300
  301 VQVFAMFLRP KPEHKHRLYW NIYHHTIGYT IIILGVVNVF KGLGILSPKK QWKNAYIGII 360
  361 VVLAIVATLL EAFTWYVVIK RRKLEAKTAQ HGASNGTRSQ YA

Type	Start	End	Confidence
Signal Peptide	1	31	0.97
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	219	0.98
Transmembrane Helix	220	241	0.92
Cytoplasmic	242	250	0.87
Transmembrane Helix	251	272	0.94
Non-Cytoplasmic	273	287	0.86
Transmembrane Helix	288	308	0.93
Cytoplasmic	309	321	0.88
Transmembrane Helix	322	345	0.84
Non-Cytoplasmic	346	354	0.88
Transmembrane Helix	355	378	0.93
Cytoplasmic	379	402	0.96