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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VHAA3_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ  60
   61 RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND IDLDDVEVKL GELEAELVEI 120
  121 NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE 180
  181 KSIDSTKQVK LGFLTGLVPR EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK 240
  241 NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG 300
  301 QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL 360
  361 QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI VDAYGVAKYQ EANPGVFTIV 420
  421 TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI 480
  481 YTGLIYNEFF SIPFPLFAPS AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP 540
  541 FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI 600
  601 IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF 660
  661 ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF EFSEIFVHQL IHTIEFVLGA 720
  721 VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME 780
  781 TLSAFLHALR LHWVEFQNKF YEGDGYKFAP FTFIFTANED E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle