YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27356928
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLGLLEEEQL RGLGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSISQE ESRQDVIYQN LTQLKAAVGE LSEKSKLQEI YQELTQLKAA VGELPEKSKQ 120
  121 QEIYQELTRL KAAVGELPEK SKMQEIYQEL TRLKAAVGEL PEKSKMQEIY QELTRLKAAV 180
  181 GELPEKSKQQ EIYQELTRLK AAVGELPEKS KQQEIYQELT QLKAAVGELP EKSKQQEIYQ 240
  241 ELTRLKAAVG ELPEKSKQQE IYQELTQLKA AVERLCRRCP WEWTFFQGNC YFMSNSQRNW 300
  301 HDSITACKEV GAQLVVIKSA EEQNFLQLQS SRSNRFTWMG LSDLNZEGTW QWVDGSPLLP 360
  361 SFNQYWNRGE PNNVGEEDCA EFSGNGWNDD KCNLAKFWIC KKSAASCSRD EEQFLSPAPA 420
  421 TPNPPPA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.82
Transmembrane Helix	36	58	0.78
Non-Cytoplasmic	59	427	0.99