YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27356854
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRVQ QLGLLEEDPT TSGIRLFPRD FQFQQIHGHK SSTGCLGHGP LVLQLLSFTL  60
   61 LAGVLVAILV QVXKVPSSLS QEQSEQDTIY QNLTQLKAAV GELSEKSKLQ EIYQELTQLK 120
  121 AAVGELPEKS KLQEIYQELT QLKAAVGELP EKSKLQEIYQ ELTQLKAAVG ELPEKSKLQE 180
  181 IYQELTQLKA AVGELPEKSK LQEIYQELTQ LKAAVGELPE KSKLQETYQE LTQLKAAVGE 240
  241 LPEKSKLQEI YQELTQLKAA VGELPEKSEL QEIYQELTQL KAALGKLPDQ SKQQQIYQEL 300
  301 TDLKTAFERL CRHCPKDWTF FQGNCYFMSN SQRNWHNSVT ACREVRAQLV VIKSAEEQNF 360
  361 LQLQTSRSNR FSWMGLSDLN QEGTWQWVDG SPLSPSFQXY WNSGEPNNSG NEDCAEFSGS 420
  421 GWNDNRCDID NYWICKKPAV CFRDE

Type	Start	End	Confidence
Cytoplasmic	1	50	0.90
Transmembrane Helix	51	73	0.85
Non-Cytoplasmic	74	445	0.98