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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19550714
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENSNKFEQ ELKEIGQDRN QFPHISVEES LQEFDSFSNK IENESKQFGA QKDPESYMAG  60
   61 GETEEDFKLR KYFENSERMH LENGGNEKKM GVSIRNLTVV GLGADASVIA DMSTPFFSIL 120
  121 NFFKPSFWTK KTSTFDILHD VTTFCKDGEM VLVLGRPGAG CSTLLRVIAN QTASYVSVKG 180
  181 DVRYGGIPSK EFERYRAESI YTPEEDSHHP TLTVRETLDF ALKCKTPGNR LPDETKRSFR 240
  241 EKVFNLLLSM FGIVHQADTI VGNEYVRGLS GGERKRLTIT EAMVSSASIT CWDCSTRGLD 300
  301 AASAFDYAKS IRIMSDTLHK TTIASFYQAS DSIYNVFDKV CVLEKGRCIY FGPVGMAKQY 360
  361 FMSLGFDCEP RKSTPDFLTG VTNPQERIIK KGFEGRTPET SADFEAAWKN SDIYRDQLQE 420
  421 QKEYEELIER TQPKVAFVQE VKDENSKTNF KKSQYTTSFI TQVVALTKRN FQLILNDKFG 480
  481 LFTKYLSVLI QAFVYSSVFY NMASDINGLF TRGGAILSAV IFNAFLSVGE MSMTFIGRRV 540
  541 LQKHKSYALY RPSALHIAQV VNDIPFTLLQ VFLFSIIAYF MFGLEYDGGK FFIFSFTLVG 600
  601 ASLACTALFR CFGYLCPSMY IAQNISNVFI IFMLTYSGYT VPIPKMHPWF SWFRHINIFT 660
  661 YAFKAIMANE FEGKEFNCLE SAIPYGPAYQ GSEFDAYRIC PLGGIEQGSL YFKGEFYMDK 720
  721 TLRFKEGEMS QNVIIVYCWW IFFVICNMLA MEYIDHTSGG YTHKVYKKGK APKMNDVEEE 780
  781 KQQNAIVANA TNNMKDTLHM DGGIFTWQNI RYTVKVPGGE RLLLNNIEGW IKPGQMTALM 840
  841 GSSGAGKTTL LDVLAKRKTL GVVEGDSHLN GRELEIDFER ITGYVEQMDV HNPGLTVREA 900
  901 LRFSAKLRQE PEVSLEEKFK YVEHVLEMME MKHLGDALIG TLETGVGISV EERKRLTIGV 960
  961 ELVAKPQILF LDEPTSGLDA QSSYNIIKFI RKLADAGMPL VCTIHQPSSV LFEHFDRILL1020
 1021 LAKGGKTVYF GDIGEKSKTL TSYFERHGVR PCTESENPAE YILEATGAGV HGKSDVNWPE1080
 1081 TWKQSPELAD ISRELAALKE QGAQQYKIRS DGPAREFSQS TWYQTKEVYK RLNLIWWRDP1140
 1141 YYTYGSFVQS ALCGLIIGFT FWNLQGSSSD MNQRIFFIFE ALMLGILLIF VVMPQLISQR1200
 1201 EYFKRDFASK FYSWFPFAIS IVVVELPFIV ISGTIFFFCS FWTAGLDKTS DSEQTFYFWF1260
 1261 IFVIFLVFCV SFGQAVAAVC INMFFAMTLI PLLIVFLFLF SGVMTPPSSI PTFWRGWVYH1320
 1321 LNPCRYFMEG IVTNILKTVD VKCSYEDMIT FTFPKSYNTC QNYTSAFQSY GPSGYVESSI1380
 1381 LNGEPACSYC IYKNGEQYYK TLGWSDDNRW RNVGIIICFF VFNILMVILF VYLTRKGSR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle