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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT3D_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSLQSSKL VLLLAIALVL FLNTELDFLT AAGALDSDSK VYIVYLGERE HDDPELVTAS  60
   61 HHQMLESLLQ SKEDAQNSLI YSYQHGFSGF AALLTSSQAK KISEHPEVIH VIPNRIRKLK 120
  121 TTRAWDHLGL SPIPTSFSSL SSVKGLLHDT NLGSEAIIGV IDSGIWPESK AVNDQGLGPI 180
  181 PKRWRGKCEP GEQFNATIHC NNKLIGARYY LNGVVAAIGG KFNRTIIQDF QSTRDANGHG 240
  241 THTATIAGGS FVPNVSYFGL AQGLVRGGAP RARIASYKAC WNVMRDEGGG TDGRCTSADM 300
  301 WKAFDDAIHD GVDVLSVSIG GGIPEDSEVD KLDYIAAFHA VAKGITVVAA AGNEGPGAHT 360
  361 VDNVAPWLLT VAATTLDRSF PTKITLGNNQ TLFAESLFTG PEISTGLAFL DSDSDDTVDV 420
  421 KGKTVLVFDS ATPIAGKGVA AVILAQKPDD LLSRCNGVPC IFPDYEFGTE ILKYIRTTRS 480
  481 PTVRITAATT LTGQPATTKV AAFSCRGPNS VSPAILKPDI AAPGVSILAA ISPLNPEEQN 540
  541 GFGLLSGTSM STPVVSGIIA LLKSLHPKWS PAAVRSALVT TAWRTSPSGE PIFAEGSNKK 600
  601 LADPFDYGGG LVNPEKAAKP GLVYDMGIVD YIKYMCSAGY NDSSISRVLG KKTNCPIPKP 660
  661 SMLDINLPSI TIPNLEKEVT LTRTVTNVGP IKSVYRAVIE SPLGITLTVN PTTLVFKSAA 720
  721 KRVLTFSVKA KTSHKVNTGY FFGSLTWSDG VHDVIIPVSV KTTISM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle