YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19528613
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGGNNSTF DLSPKTLAAV GVGLVAVGGA SFLLYRHLTR DVVPQKWRRV GTVERIHFFP  60
   61 VKSCAPMDIS KPGVEYDCDV LSMSFEGIRD RTLMVVNEKN EMITARAYPL MTQIKSKKVS 120
  121 PSKLVFSAQD MPDLELDFEK LDGPGKDVKT SVWGVSIDVM PCGDRINTWF SQAILKKESG 180
  181 LKLVHYPYPK PVRCTNPRLK SMPFIRQEDS GTFNDATSFM LMNLSSVADL NTRLKNPVDA 240
  241 LQFRGNFELK MDVDEPYAED NWQWVRIGED AVFRTVAPCT RCIFTNINAK TAERSSEGEP 300
  301 LKTLRSYRLF NYSSPALGVH MGLRLPGKVK ANDVVYVEDK

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.61
Transmembrane Helix	16	39	0.77
Cytoplasmic	40	340	0.57