YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19528067
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEDSSRRLP RWWFGGVCAA IAVTGTHPID LIKVQLQTQS QADRKSVGEI LKGIHERSGI  60
   61 LGFYNGISAS WFRQLTYTTT RFALYEAGKD YVDTQKVSSK MALATFAGIV GGIVGVPGDV 120
  121 VTVRLQNDVK LPEEKRRNYK HVFDGLFRIY KEEGVSSLFR GTVPAVSRAV LLTIGTNAAY 180
  181 DQVKQMLKIA TGAGEGVPLH FATSTIAGCI AVVITQPLDV IKTTFMNAQP GEFSGIGGAF 240
  241 LSTAKQGPLA FYKGFIPALI RVSPNTIITF VLYEQARMRF GYLPPDK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	31	0.88
Non-Cytoplasmic	32	287	0.80