YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19527797
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQNLLVLL VISFFPIYNC LGDSPRNAFS SLNRVKRLSD GDFDEDSIAL SNYCVSLRSR  60
   61 SAEKFFGDNH FCSGVILAPM FVMTSAHCLI NKRRVLISSR VLLIVAGTLN RLKYIPNRTF 120
  121 VTPVTHIWLP DSFTMRNKQD FGLLKVKNPF PRNNEHISIA RLPVHPPLPG LKCKVMGWGR 180
  181 MYKGGPLASY MLYIDVQVID SEACAKWLRV PSVEHVCAVD SDDLTAQQPC GGDWGAPMLH 240
  241 NGTVYGIVTI LAGCGVSHLP SLYTNVHSNA NWIHEKIISS AGSILLVPPL FRYLSIALIY 300
  301 VVTLFNFVMK YNGVM

Type	Start	End	Confidence
Signal Peptide	1	22	0.85
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	69	0.93
Transmembrane Helix	70	90	0.59
Cytoplasmic	91	241	0.63
Transmembrane Helix	242	262	0.67
Non-Cytoplasmic	263	289	0.78
Transmembrane Helix	290	309	0.86
Cytoplasmic	310	315	0.63