YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19527725
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPVKGIIG ILATAGSFFA LGAYYQHIDV MRKIRRLEQR NPHAYFIRRK LYALLGIFAV  60
   61 RPDNTEFDVD PDDCHKLGGI MKYGFPSTND ITINETFDFV TSFDRRNSAI LWMCERVDLS 120
  121 NRVVYGDSTS VAPAGAFGQS EAARVFFLSN IRPFLNRGFN LTVWDRLLQY VHEMSQRHGT 180
  181 VYAYTGSIYL PRELKSNSWF LEFQSEERTM VAVPTHFFKI LVIDKKFGGD TIPYAEAYVM 240
  241 PNSPLNNNVE LKTLLSDVRE IENATGLRFF EGLDRNFVNT QASNSFVPSV NGPLTNPLTL 300
  301 PMTNALDSHS ALTSSISPK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.29
Transmembrane Helix	7	23	0.57
Non-Cytoplasmic	24	319	0.72