YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19525676
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYALKARPLR RYIPKNPYQY KFWYVVNSSP FEYMMFVLIM LNTLCLAMQH YEQSKMFNDA  60
   61 MDILNMVFTG VFTVEMVLKV IAFKPKHYFT DAWNTFDALI VVGSVVDIAI TEVNNSEESN 120
  121 RISITFFRLF RVMRLVKLLS RGEGIRTLLW TFIKSFQALP YVALLIAMLF FIYAVIGMQM 180
  181 FGKVAMRDNN QINRNNNFQT FPQAVLLLFR CATGEAWQEI MLACLPGKLC DPDSDY

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	51	0.66
Non-Cytoplasmic	52	62	0.57
Transmembrane Helix	63	83	0.85
Cytoplasmic	84	92	0.58
Transmembrane Helix	93	110	0.50
Non-Cytoplasmic	111	157	0.72
Transmembrane Helix	158	177	0.94
Cytoplasmic	178	236	0.79