YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19422000
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMASLFSF TSPAVKRLLG WKQGDEEEKW AEKAIDSLVK KLKKRKGALE ELEKALSNPS  60
   61 SGNSKCVTIP RSLDGRLQVS HRKGLPHVIY CRVWRWPDLQ SHHELKPLDC CEFAFGLNKK 120
  121 EVCINPYHYR RVETPVLPPV LVPRQSEYPR AQAPLPYHMQ HSSHSGMPHN ATLPGYPLSA 180
  181 YSSNSDTPPP AYMSEDGGSP RPDPSLMDTD GALSPDVTPI TYQDPLNWCS IAYYELNLRV 240
  241 GEPFHASGTS LIIDGFTDPN TSSDRFCLGG MSNVNRNSTI ENTRRHISKG VHLYYVGGEV 300
  301 FAECLSDSAV FVQSKNCNYH HGFHPSTVCK IPPQCTLKIF NNQEFAQLLS QSVNHGYEAV 360
  361 YELSKHCTIR MSFVKGWGAE YHRQGVTSTP CWIEIHLHGP LQWLDKVLTQ MGSPQNAITS 420
  421 VS

Type	Start	End	Confidence
Signal Peptide	1	17	0.54
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	422	0.99