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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19421557
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQKKEKQL SNLKVLNHSP MSDASVNFDY KSPSPFDCST DQEEKIEDVA SHCLPQKDLY  60
   61 TAEEEAATLF PRKMTSHNGM EDSGGGGTGV KKKRKKKEPG DQEGAAKGSK DREPKPKRKR 120
  121 EPKEPKEPRK AEEPKKAKEH KEPKQKDGAK KARKPREASG TKEAKEKRSC TDSAARTKSR 180
  181 KASKEQGPTP VEKKKKGKRK SETTVESLEL DQGLTNPSLR SPEESTESTD SQKRRSGRQV 240
  241 KRRKYNEDLD FKVVDDDGET IAVLGAGRTS ALSASTLAWQ AEEPPEDDAN IIEKILASKT 300
  301 VQEVHPGEPP FDLELFYVKY RNFSYLHCKW ATMEELEKDP RIAQKIKRFR NKQAQMKHIF 360
  361 TEPDEDLFNP DYVEVDRILE VAHTKDAETG EEVTHYLVKW CSLPYEESTW ELEEDVDPAK 420
  421 VKEFESLQVL PEIKHVERPA SDSWQKLEKS REYKNSNQLR EYQLEGMNWL LFNWYNRKNC 480
  481 ILADEMGLGK TIQSITFLSE IFLRGIHGPF LIIAPLSTIT NWEREFRTWT EMNAIVYHGS 540
  541 QISRQMIQQY EMVYRDAQGN PLSGVFKFHV VITTFEMILA DCPELKKIHW SCVIIDEAHR 600
  601 LKNRNCKLLE GLKLMALEHK VLLTGTPLQN SVEELFSLLN FLEPSQFPSE TAFLEEFGDL 660
  661 KTEEQVKKLQ SILKPMMLRR LKDDVEKNLA PKQETIIEVE LTNIQKKYYR AILEKNFSFL 720
  721 TKGANQHNMP NLINTMMELR KCCNHPYLIN GAEEKILEDF RKTHSPDAPD FQLQAMIQAA 780
  781 GKLVLIDKLL PKLIAGGHKV LIFSQMVRCL DILEDYLIQR RYTYERIDGR VRGNLRQAAI 840
  841 DRFCKPDSDR FVFLLCTRAG GLGINLTAAD TCIIFDSDWN PQNDLQAQAR CHRIGQSKAV 900
  901 KVYRLITRNS YEREMFDKAS LKLGLDKAVL QDINRKGGTN GVQQLSKMEV EDLLRKGAYG 960
  961 ALMDEEDEGS KFCEEDIDQI LQRRTHTITI QSEGKGSTFA KASFVASGNR TDISLDDPNF1020
 1021 WQKWAKIAKL DTEAKNEKES LVIDRPRVRK QTKHYNSFEE DELMEFSELD SDSDERPTRS1080
 1081 RRLNDKARRY LRAECFRVEK NLLIFGWGRW KDILTHGRFK WHLNEKDMEM ICRALLVYCV1140
 1141 KHYKGDEKIK SFIWELITPT KDGQAQTLQN HSGLSAPVPR GRKGKKTKNQ LLIPELKDAD1200
 1201 WLATCNPEVV LHDDGYKKHL KQHCNKVLLR VRMLYYLKAE ILGEAAEKAF EGSPARELDV1260
 1261 PLPDIDYMEI PVDWWDAEAD KSLLIGVFKH GYERYNAMRA DPALCFLEKV GMPDEKSLSA1320
 1321 EQGVTDGTSD IPERGNTDKE DNAEDKVDGL QKQTESSSDG GDGVFSEKKD DSRAAQDGSD1380
 1381 PDKSPWPVSS ALTARLRRLV TVYQRCNRKE LCRPEILGPG NQGYWVQEEM FRRTSEMDLI1440
 1441 NKEAQKRWTR REQADFYRTV SSFGVVYDQE KKTFDWTQFR IISRLDKKSD ESLEQYFYSF1500
 1501 VAMCRNVCRL PTWKDGGPPD TTIYVEPITE ERAARTLYRI ELLRKVREQV LKCPQLHERL1560
 1561 QLCRPSLYLP VWWECGKHDR DLLIGTAKHG LNRTDCYIMN DPQLSFLDAY RNYAQHKRSG1620
 1621 TQAPGNLCCL YQTNSKLYES LTYSQMSRTS ESLENEPENL VRVESRDDHL SLPDVTCENF1680
 1681 ISKVQDVISI NHDESLLPES LESMMYGKKV LSQEPSSFQE SPSTNTESRK DVITISISKD1740
 1741 GNCQSGGPEA EIASGPTFMG SLEAGGVAQA NIKNGKHLLM SISKEGELCC SEAGQRPENI1800
 1801 GQLEAKCLAS PSLNPGNESG FVDMCSLSVC DSKRNLSSDQ QLIDLLENKS LESKLILSQN1860
 1861 HSDEEEEEEE NEEENLAMAV GMGERPEVLH LTEPTTNISR EKNQGFQDET KKGSLEVANQ1920
 1921 TPGLQRAFPA PAACQCHCKH MERWMHGLEN DEFEIEKPKA YIPDLFKSKT NTIAMEGEPT1980
 1981 AIPSQPFKVK HELLKEPWKE SAEGQNVFPT YPLEGSELKS EDMDFENKDD YDRDGNCHSQ2040
 2041 DYPGKYSEEE SKSSTSGITG DIGDELQEAR APTIAQLLQE KTLYSFSEWP KDRVIINRLD2100
 2101 NICHVVLKGK WPSSQQYEPS GTLPTPVLTS SAGSRTSLSE PEAAEHSFSN GAALAAQIHK2160
 2161 ESFLAPVFTK DEQKHRRPYE FEVERDAKAR GLEQFSATHG HTPIILNGWH GESAMDLSCS2220
 2221 SEGSPGATSP FPVSASTPKI GAISSLQGAL GMDLSGILQA GLIHPVTGQI VNGSLRRDDA2280
 2281 ATRRRRGRRK HVEGGMDLIF LKEQTLQAGI LEVHEDPGQA TLSTTHPEGP GPATSAPEPA2340
 2341 TAASSQAEKS IPSKSLLDWL RQQADYSLEV PGFGANFSDK PKQRRPRCKE PGKLDVSSLS2400
 2401 GEERVPAIPK EPGLRGFLPE NKFNHTLAEP ILRDTGPRRR GRRPRSELLK APSIVADSPS2460
 2461 GMGPLFMNGL IAGMDLVGLQ NMRNMPGIPL TGLVGFPAGF ATMPTGEEVK STLSMLPMML2520
 2521 PGMAAVPQMF GVGGLLSPPM ATTCTSTAPA SLSSTTKSGT AVTEKTAEDK PSSHDVKTDT2580
 2581 LAEDKPGPGP FSDQSEPAIT TSSPVAFNPF LIPGVSPGLI YPSMFLSPGM GMALPAMQQA2640
 2641 RHSEIVGLES QKRKKKKTKG GNPNSHPEPA PSCEREPSGD ENCAEPSAPL PAEREHGAQA2700
 2701 GEGALKDSNN DTN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle